PERMANOVA
Permutational MANOVA

Resemblance worksheet
Name: Holo Neck
Data type: Similarity
Selection: All
Resemblance: S17 Bray Curtis similarity (+d)

Sums of squares type: Type III (partial)
Fixed effects sum to zero for mixed terms
Permutation method: Permutation of residuals under a reduced model
Number of permutations: 9999

Factors
Name	Abbrev.	Type	Levels
Period	Pe	Fixed	     3
Treatment	Tr	Fixed	     2

PERMANOVA table of results
	  	      	      	        	       	Unique
Source	df	    SS	    MS	Pseudo-F	P(perm)	 perms
Pe	 2	123.22	61.612	 0.53794	 0.6005	  9955
Tr	 1	386.95	386.95	  3.3784	 0.0712	  9918
PexTr	 2	55.225	27.613	 0.24109	 0.8141	  9956
Res	29	3321.5	114.53	        	       	      
Total	34	3885.7	      	        	       	      

Details of the expected mean squares (EMS) for the model
Source	EMS
Pe	1*V(Res) + 8.9082*S(Pe)
Tr	1*V(Res) + 13.361*S(Tr)
PexTr	1*V(Res) + 4.4541*S(PexTr)
Res	1*V(Res)

Construction of Pseudo-F ratio(s) from mean squares
Source	Numerator	Denominator	Num.df	Den.df
Pe	1*Pe	1*Res	     2	    29
Tr	1*Tr	1*Res	     1	    29
PexTr	1*PexTr	1*Res	     2	    29

Estimates of components of variation
Source	Estimate	Sq.root
S(Pe)	 -5.9408	-2.4374
S(Tr)	  20.389	 4.5154
S(PexTr)	 -19.515	-4.4176
V(Res)	  114.53	 10.702