PERMANOVA
Permutational MANOVA

Resemblance worksheet
Name: Resem51
Data type: Similarity
Selection: All
Resemblance: S17 Bray Curtis similarity

Sums of squares type: Type III (partial)
Fixed effects sum to zero for mixed terms
Permutation method: Permutation of residuals under a reduced model
Number of permutations: 9999

Factors
Name	Abbrev.	Type	Levels
Treatment	Tr	Fixed	     2
Period	Pe	Fixed	     3

PERMANOVA table of results
	  	      	      	        	       	Unique
Source	df	    SS	    MS	Pseudo-F	P(perm)	 perms
Tr	 1	602.52	602.52	  1.4468	 0.1919	  9933
Pe	 2	497.43	248.71	 0.59723	 0.7378	  9924
TrxPe**	 1	169.55	169.55	 0.40714	 0.5516	  9936
Res	28	 11660	416.44	        	       	      
Total	32	 13170	      	        	       	      

** Term has one or more empty cells

Details of the expected mean squares (EMS) for the model
Source	EMS
Tr	1*V(Res) + 7.3577*S(Tr)
Pe	1*V(Res) + 8.8008*S(Pe)
TrxPe	1*V(Res) + 3.6788*S(TrxPe)
Res	1*V(Res)

Construction of Pseudo-F ratio(s) from mean squares
Source	Numerator	Denominator	Num.df	Den.df
Tr	1*Tr	1*Res	     1	    28
Pe	1*Pe	1*Res	     2	    28
TrxPe	1*TrxPe	1*Res	     1	    28

Estimates of components of variation
Source	Estimate	Sq.root
S(Tr)	   25.29	 5.0289
S(Pe)	 -19.058	-4.3656
S(TrxPe)	 -67.112	-8.1922
V(Res)	  416.44	 20.407