CANON Data : CANON 2012 May MB Data Archive Description This page last changed on Jun 25, 2012 by duane. Link to this page: https://oceana.mbari.org/confluence/display/CDATA/CANON+2012+May+MB+Data+Archive+Description Back to CANON Data Archive Descriptions ### CANON May 21 – June 6, 2012 Experiment Platform Timeline Research focus: measure and budget the sources and sinks of ammonium in one of the environments of the California Current System June High Level Plan This is part one of a two part series, the with second part to be conducted in September 2012. Spring CANON12 - Studies in the shelf region The Spring focus was on the upwelling plume, the upwelling shadow in northern Monterey Bay and the front in between them. Figure 7Bio shows the mean sea surface temperature and fluorescence line height (a proxy for chlorophyll) for the May-June period with the proposed locations of AUV, glider and ship tracks. The list of assets and their dates is given below. Deploy Waveglider and Webb gliders on May 21 for reconnaissance phase (see attached document for repeat transects), recover on June 7 or 8 Deploy Spray glider on May 25 for reconnaissance phase (see attached document for repeat transects), recover on June 7 or 8 Deploy LRAUV Daphne May 29 (Tuesday) with Turbulence Sensor for transect along 36.9N. Recover LRAUV Daphne May 31 (Thursday). Deploy LRAUV Tethys May 31. June 6 Deploy LRAUV Daphne June 4th (Monday). Recover both LRAUVs no later than June 8th. Deploy Dorado May, 29, 30, 31 (three evenings) with LIST and LIST Holo, make transect offshore along 36.9, collect water on the return transect in upwelling plume, front and shadow. Repeat June 5, 6. Deploy R/V Fulmar May 29, 30, 31, and maybe June 1 deploy drifters along 36.9 and collect water on the return transect in upwelling plume, front and shadow. Repeat June 5, 6, 7, and maybe 8. Drifters recovered daily unless clear that they will not exit region rapidly. ### LRAUV (Tethys, Daphne) Real time data and data products: http://aosn.mbari.org/sbdlogs/ Full resolution post deployment data and products: \\Tornado\ProjectLibrary\900739.LRAUV.Data\Testing STOQS: http://odss-staging.shore.mbari.org/canon/stoqs_may2012/query/ ### Mooring Data http://dods.mbari.org/data/ssdsdata/deployments/previous.html M1: 201202 2012-02-22 to present SSDS: http://new-ssds.mbari.org/ssds/faces/explorer.jsp (Select "Mooring" from the drop down and explore the tree) THREDDS (one stop shop): http://elvis.shore.mbari.org/thredds/OSMooringCatalog.html ### Dorado AUV Data AUV 2012 Deployments (raw vehicle files) (YD 142 to 158) AUV 2012 Deployments (netcdf files) AUV 2012 Science Data Products STOQS: http://odss-staging.shore.mbari.org/canon/stoqs_may2012/query/ #### AUV survey Dorado389_2012_150_00_150_00 beginning on 29-May-2012 has been processed using ctd2. Below are the science data products now available for review: Quick look plots: http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_150_00_150_00_biolume.png (fixed contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_150_00_150_00_2column.png (free contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_150_00_150_00_lopc.png (LOPC count data) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_150_00_150_00_nav_adjust.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_150_00_150_00_hist_stats.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_150_00_150_00_prof_stats.png Full resolution matlab data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/mat/Dorado389_2012_150_00_150_00.mat it's NetCDF counterpart (via OPeNDAP URL): http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_150_00_150_00.nc.html Decimated NetCDF file (sampled at the ISUS or 2 sec sampling frequency) with all variables interpolated to the same time axis: http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_150_00_150_00_decim.nc.html Decimated Ocean Data View import data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_150_00_150_00.txt Gulper bottle numbers and data at sample collection (ODV tab-delimited) file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_150_00_150_00_Gulper.txt Google Earth sensor point tracks http://dods.mbari.org/data/auvctd/surveys/2012/kml/Dorado389_2012_150_00_150_00.kml The above web links are a mapping from the \\tornado\auvctd\surveys\2012 directory. You may get the data from this network share or from the above URLs. The processing log output: http://ssds.shore.mbari.org/auvctd/surveys/2012/logs/Dorado389_2012.150.00_150.00_diary.log #### AUV survey Dorado389_2012_151_00_151_00 beginning on 30-May-2012 has been processed using ctd2. Below are the science data products now available for review: Quick look plots: http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_151_00_151_00_biolume.png (fixed contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_151_00_151_00_2column.png (free contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_151_00_151_00_lopc.png (LOPC count data) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_151_00_151_00_nav_adjust.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_151_00_151_00_hist_stats.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_151_00_151_00_prof_stats.png Full resolution matlab data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/mat/Dorado389_2012_151_00_151_00.mat it's NetCDF counterpart (via OPeNDAP URL): http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_151_00_151_00.nc.html Decimated NetCDF file (sampled at the ISUS or 2 sec sampling frequency) with all variables interpolated to the same time axis: http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_151_00_151_00_decim.nc.html Decimated Ocean Data View import data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_151_00_151_00.txt Gulper bottle numbers and data at sample collection (ODV tab-delimited) file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_151_00_151_00_Gulper.txt Google Earth sensor point tracks http://dods.mbari.org/data/auvctd/surveys/2012/kml/Dorado389_2012_151_00_151_00.kml The above web links are a mapping from the \\tornado\auvctd\surveys\2012 directory. You may get the data from this network share or from the above URLs. The processing log output: http://ssds.shore.mbari.org/auvctd/surveys/2012/logs/Dorado389_2012.151.00_151.00_diary.log #### AUV survey Dorado389_2012_152_00_152_00 beginning on 31-May-2012 has been processed using ctd2. Below are the science data products now available for review: Quick look plots: http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_152_00_152_00_biolume.png (fixed contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_152_00_152_00_2column.png (free contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_152_00_152_00_lopc.png (LOPC count data) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_152_00_152_00_nav_adjust.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_152_00_152_00_hist_stats.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_152_00_152_00_prof_stats.png Full resolution matlab data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/mat/Dorado389_2012_152_00_152_00.mat it's NetCDF counterpart (via OPeNDAP URL): http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_152_00_152_00.nc.html Decimated NetCDF file (sampled at the ISUS or 2 sec sampling frequency) with all variables interpolated to the same time axis: http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_152_00_152_00_decim.nc.html Decimated Ocean Data View import data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_152_00_152_00.txt Gulper bottle numbers and data at sample collection (ODV tab-delimited) file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_152_00_152_00_Gulper.txt Google Earth sensor point tracks http://dods.mbari.org/data/auvctd/surveys/2012/kml/Dorado389_2012_152_00_152_00.kml The above web links are a mapping from the \\tornado\auvctd\surveys\2012 directory. You may get the data from this network share or from the above URLs. The processing log output: http://ssds.shore.mbari.org/auvctd/surveys/2012/logs/Dorado389_2012.152.00_152.00_diary.log AUVprocess_main run by ssdsadmin on elvis.shore.mbari.org at 01-Jun-2012 15:05:40 #### AUV survey Dorado389_2012_157_07_157_07 beginning on 05-Jun-2012 has been processed using ctd2. Below are the science data products now available for review: Quick look plots: http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_157_07_157_07_biolume.png (fixed contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_157_07_157_07_2column.png (free contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_157_07_157_07_lopc.png (LOPC count data) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_157_07_157_07_nav_adjust.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_157_07_157_07_hist_stats.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_157_07_157_07_prof_stats.png Full resolution matlab data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/mat/Dorado389_2012_157_07_157_07.mat it's NetCDF counterpart (via OPeNDAP URL): http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_157_07_157_07.nc.html Decimated NetCDF file (sampled at the ISUS or 2 sec sampling frequency) with all variables interpolated to the same time axis: http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_157_07_157_07_decim.nc.html Decimated Ocean Data View import data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_157_07_157_07.txt Gulper bottle numbers and data at sample collection (ODV tab-delimited) file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_157_07_157_07_Gulper.txt Google Earth sensor point tracks http://dods.mbari.org/data/auvctd/surveys/2012/kml/Dorado389_2012_157_07_157_07.kml The above web links are a mapping from the \\tornado\auvctd\surveys\2012 directory. You may get the data from this network share or from the above URLs. The processing log output: http://ssds.shore.mbari.org/auvctd/surveys/2012/logs/Dorado389_2012.157.07_157.07_diary.log #### AUV survey Dorado389_2012_158_00_158_00 beginning on 06-Jun-2012 has been processed using ctd2. Below are the science data products now available for review: Quick look plots: http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_158_00_158_00_biolume.png (fixed contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_158_00_158_00_2column.png (free contour limits) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_158_00_158_00_lopc.png (LOPC count data) http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_158_00_158_00_nav_adjust.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_158_00_158_00_hist_stats.png http://ssds.shore.mbari.org/auvctd/surveys/2012/images/Dorado389_2012_158_00_158_00_prof_stats.png Full resolution matlab data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/mat/Dorado389_2012_158_00_158_00.mat it's NetCDF counterpart (via OPeNDAP URL): http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_158_00_158_00.nc.html Decimated NetCDF file (sampled at the ISUS or 2 sec sampling frequency) with all variables interpolated to the same time axis: http://dods.mbari.org/cgi-bin/nph-nc/data/auvctd/surveys/2012/netcdf/Dorado389_2012_158_00_158_00_decim.nc.html Decimated Ocean Data View import data file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_158_00_158_00.txt Gulper bottle numbers and data at sample collection (ODV tab-delimited) file: http://ssds.shore.mbari.org/auvctd/surveys/2012/odv/Dorado389_2012_158_00_158_00_Gulper.txt Google Earth sensor point tracks http://dods.mbari.org/data/auvctd/surveys/2012/kml/Dorado389_2012_158_00_158_00.kml The above web links are a mapping from the \\tornado\auvctd\surveys\2012 directory. You may get the data from this network share or from the above URLs. The processing log output: http://ssds.shore.mbari.org/auvctd/surveys/2012/logs/Dorado389_2012.158.00_158.00_diary.log ### ESP No ESP deployed during May/June 2012 Experiment ### Waveglider, LCS and Fulmar plots Waveglider: STOQS: http://odss-staging.shore.mbari.org/canon/stoqs_may2012/query/ Mount the folder //atlas/ODSS/data/canon directly without FTP 2012_May/waveglider/figures, 2012_May/lcs/figures, 2012_May/RV_Fulmar/figures This central repository is available for platform data as well as generated plots. Plots can be accessed via the Cosci perspective of ODSS. Alternative: There is an FTP accessible fileshare available on the server beach If you do not have FTP experience, it is recommended to use FileZilla, a free FTP client (--http://filezilla-project.org/) MBARI IS is reporting some difficulties with FileZilla after the move to the new Atlas file server. They now recommend using FireFTP, an FTP client addin for FireFox, Chrome and Internet Explorer. http://fireftp.mozdev.org/ Or if you are a google chrome user, https://chrome.google.com/webstore/detail/ehdgcfaoankkonoiichmblcfijkomfbn#detail/ehdgcfaoankkonoiichmblcfijkomfbn Log into the FTP site, and browse to the directory for the latest CANON campaign, ex. CANON_2012_May server: beach.mbari.org user: canon pass: canon2011 here are some examples: ftp://canon:canon2011@beach.mbari.org/2012_May/RV_Fulmar/html/Fulmar_06Jun12.htm ftp://canon:canon2011@beach.mbari.org/2012_May/lcs/html/LCS_06Jun12.htm ftp://canon:canon2011@beach.mbari.org/2012_May/waveglider/html/waveglider_leg11.htm ### Information about STOQS ##### About STOQS STOQS (Spatial Temporal Oceanographic Query System) is a geospatial database web application designed for providing efficient access to in situ oceanographic measurement data across any dimension. Where "dimension" is considered in the broadest sense, for example: any spatial dimension, time, the collection of platforms, any other parameter value in the database. ##### Use Case ###### Precondition: Observational data from a variety of platforms (Gliders, AUVs, Shipboard systems) are individually available from OPeNDAP servers. ###### Goal: Retrieve data by parameter name across all platforms in a specific area over a specific span of time ##### Data Management Niche STOQS complements other data management technologies such as NetCDF and OPeNDAP by providing an ability to index data retrieval across parameter and spatial dimensions in addition to the a priori indexed coordinate dimensions of CF-NetCDF. It also provides a functional bridge between NetCDF and Geographic Information Systems technologies. ##### Operation Data is loaded into STOQS from a variety of data sources, including OPeNDAP data sets, other relational databases, and flat files. Products are delivered in a variety of formats, including KML, via REST-style web requests. STOQS was developed at the Monterey Bay Aquarium Research Institute (MBARI) and is used within the Oceanographic Decision Support System (ODSS) to provide data management for campaign-oriented multi-platform investigations of oceanographic processes. ##### Access The MBARI Oceanographic Decision Support System (ODSS) hosts http://odss.mbari.org/canon/default/query/ to provide access to upper water column in situ measurement data collected as part of the Controlled, Agile and Novel Observing Network (CANON) project. For more information, contact a member of the ODSS engineering team to get a personal overview and walk-through of STOQS and the query interface. Attachments: CANON_MayPlanning2.pdf (application/pdf) CANONJuneExperiment.docx (application/vnd.openxmlformats-officedocument.wordprocessingml.document) CANON_Biogeo.pdf (application/pdf) CANON_Biogeo.docx (application/vnd.openxmlformats-officedocument.wordprocessingml.document)

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