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`Insert/Science.xml`¶

Aggregate ID: Science

Aggregate Path: Insert/Science.xml

(No description)

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Arguments¶

PeakDetectChlActive¶

PeakDetectChlActive = false

Turns on peak detection of Cholorphyll.

TimeWindowPeakReport¶

TimeWindowPeakReport = NaN minute

If greater than zero, report a peak every window. If NaN or zero, this variable is ignored.

HighestChlPeakReportActive¶

HighestChlPeakReportActive = false

Turns on reporting of the highest peak value of chlorophyll on yo-yo profiles in a horizontal sliding window (of length numProfilesSlidingwindow)

HighestSaltPeakReportActive¶

HighestSaltPeakReportActive = false

Turns on reporting of the highest peak value of salinity on yo-yo profiles in a horizontal sliding window (of length numProfilesSlidingwindow)

HighestOilPeakReportActive¶

HighestOilPeakReportActive = false

Turns on reporting of the highest peak value of oil on yo-yo profiles in a horizontal sliding window (of length numProfilesSlidingwindow)

PatchTracking¶

PatchTracking = false

If tracking a patch

DetectTrough¶

DetectTrough = false

Whether to track a trough. If false, track peak; if true, track trough. Default is false.

FilterWidthHorizontal¶

FilterWidthHorizontal = 3 count

Width of boxcar filter applied to yoyo-wise chl peaks to pick out the highest peak.

NumProfilesSlidingwindow¶

NumProfilesSlidingwindow = 100 count

Length of horizontal sliding window. The highest yoyo-wise chl peak (after low-pass filtering by a filter of length FilterWidthHorizontal) within this window.

OffPeakFractionHorizontal¶

OffPeakFractionHorizontal = 80 percent

When filtered horizontal value is this fraction of the peak, consider it outside the patch.

PeakDetectNO3Active¶

PeakDetectNO3Active = false

Turns on peak detection of Nitrate (and turns on ISUS).

PeakDetectOilActive¶

PeakDetectOilActive = false

Turns on peak detection of Dissolved Oil.

PeakDetectFDOMActive¶

PeakDetectFDOMActive = false

Turns on peak detection of concentration_of_colored_dissolved_organic_matter_in_sea_water from FDOM sensor.

PeakDetectSalinityActive¶

PeakDetectSalinityActive = false

Turns on peak detection of salinity.

UpwardDerivativeOfTemperatureActive¶

UpwardDerivativeOfTemperatureActive = false

Turns on seawater temperature derivative.

EnabledAanderaaO2¶

EnabledAanderaaO2 = Science:Aanderaa_O2.loadAtStartup

Automatically set to True if the Aanderaa O2 sensor is installed. Set to false to disable reading Aandera O2.

EnabledNeilBrown¶

EnabledNeilBrown = Science:CTD_NeilBrown.loadAtStartup

Automatically set to true if the Neil Brown CTD is enabled. Set to false to disable reading from the Neil Brown.

EnabledSeabird¶

EnabledSeabird = Science:CTD_Seabird.loadAtStartup

Automatically set to true if the CTD is enabled. Set to false to disable reading from the CTD.

EnabledWetLabsBB2FL¶

EnabledWetLabsBB2FL = Science:WetLabsBB2FL.loadAtStartup

Automatically set to true if the the WetLabs BB2FL is enabled. Set to false to disable the WetLabs BB2FL.

EnabledWetLabsSeaOWL_UV_A¶

EnabledWetLabsSeaOWL_UV_A = Science:WetLabsSeaOWL_UV_A.loadAtStartup

Automatically set to true if the the WetLabs SeaOWL UV-A is enabled. Set to false to disable the WetLabs SeaOWL UV-A.

EnabledWetLabsUBAT¶

EnabledWetLabsUBAT = Science:WetLabsUBAT.loadAtStartup

Automatically set to true if the the WetLabs UBAT is enabled. Set to false to disable the WetLabs UBAT.

LowPassWindowLength¶

LowPassWindowLength = 20 count

Low-pass window length (based on depth sensor sampling interval 0.4 second) for low-pass filtering.

MedianFilterLen¶

MedianFilterLen = 5 count

Median filter length (only for chlorophyll fluorescence which tends to have spikes)

PeakShallowBound¶

PeakShallowBound = NaN meter

Shallow depth bound for detecting any peak on each descent or ascent profile.

PeakDeepBound¶

PeakDeepBound = NaN meter

Deep depth bound for detecting any peak on each descent or ascent profile.

DepChangeThreshForAttitudeFlip¶

DepChangeThreshForAttitudeFlip = 2.0 meter

Depth change threshold for determining vehicle attitude flip.

ChlThreshTriggerActive¶

ChlThreshTriggerActive = false

Turns on chlorophyll threshold trigger.

ChlLowerThresh¶

ChlLowerThresh = NaN microgram_per_liter

Used only when ChlThreshTriggerActive is True. Triggered when chlorophyll falls in [ChlLowerThresh ChlUpperThresh]. ChlLowerThresh is ignored if NaN.

ChlUpperThresh¶

ChlUpperThresh = NaN microgram_per_liter

Used only when ChlThreshTriggerActive is True. Triggered when chlorophyll falls in [ChlLowerThresh ChlUpperThresh]. ChlUpperThresh is ignored if NaN.

NumProfilesThresh¶

NumProfilesThresh = 5 count

Used only when ChlThreshTriggerActive is True. Triggered when chlorophyll falls in [lowerThreshold upperThreshold] on numProfilesThreshold consecutive profiles.

Output¶

PeakChl¶

PeakChl = NaN microgram_per_liter

PeakChlDepth¶

PeakChlDepth = NaN meter

PeakChlTemperature¶

PeakChlTemperature = NaN celsius

PeakChlLatitude¶

PeakChlLatitude = NaN degree

PeakChlLongitude¶

PeakChlLongitude = NaN degree

PeakNO3¶

PeakNO3 = NaN micromole_per_liter

PeakNO3Depth¶

PeakNO3Depth = NaN meter

PeakNO3Latitude¶

PeakNO3Latitude = NaN degree

PeakNO3Longitude¶

PeakNO3Longitude = NaN degree

PeakOil¶

PeakOil = NaN kilogram_per_cubic_meter

PeakOilDepth¶

PeakOilDepth = NaN meter

PeakOilLatitude¶

PeakOilLatitude = NaN degree

PeakOilLongitude¶

PeakOilLongitude = NaN degree

PeakFDOM¶

PeakFDOM = NaN part_per_billion

PeakFDOMDepth¶

PeakFDOMDepth = NaN meter

PeakFDOMTemperature¶

PeakFDOMTemperature = NaN celsius

PeakFDOMLatitude¶

PeakFDOMLatitude = NaN degree

PeakFDOMLongitude¶

PeakFDOMLongitude = NaN degree

PatchFDOMDistance¶

PatchFDOMDistance = NaN meter

PeakSalt¶

PeakSalt = NaN psu

PeakSaltDepth¶

PeakSaltDepth = NaN meter

PeakSaltTemperature¶

PeakSaltTemperature = NaN celsius

PeakSaltLatitude¶

PeakSaltLatitude = NaN degree

PeakSaltLongitude¶

PeakSaltLongitude = NaN degree

PatchChl¶

PatchChl = NaN microgram_per_liter

PatchChlDepth¶

PatchChlDepth = NaN meter

PatchChlLatitude¶

PatchChlLatitude = NaN degree

PatchChlLongitude¶

PatchChlLongitude = NaN degree

PatchChlDistance¶

PatchChlDistance = NaN meter

PatchSalt¶

PatchSalt = NaN psu

PatchSaltDepth¶

PatchSaltDepth = NaN meter

PatchSaltLatitude¶

PatchSaltLatitude = NaN degree

PatchSaltLongitude¶

PatchSaltLongitude = NaN degree

PatchSaltDistance¶

PatchSaltDistance = NaN meter

PatchOil¶

PatchOil = NaN psu

PatchOilDepth¶

PatchOilDepth = NaN meter

PatchOilLatitude¶

PatchOilLatitude = NaN degree

PatchOilLongitude¶

PatchOilLongitude = NaN degree

PatchOilDistance¶

PatchOilDistance = NaN meter

TriggeredOnChl¶

TriggeredOnChl = false

ChlTriggering¶

ChlTriggering = NaN microgram_per_liter

Insert/Science.xml¶